Author
Author Affiliations
Abstract
Summary: We have developed Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or used as a standalone application.
Availability: Cake is open-source and is available fromhttp://cakesomatic.sourceforge.net/
Contact: da1@sanger.ac.uk
Supplementary Information: Supplementary data are available atBioinformatics online.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
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