Bioconductor version: Release (2.12)
This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the
information form a list of differentially expressed genes and their log fold changes together
with signaling pathways topology, in order to identify the pathways most relevant to the
condition under the study.
Author: Adi Laurentiu Tarca <atarca at med.wayne.edu>, Purvesh Kathri <purvesh at
cs.wayne.edu> and Sorin Draghici <sorin at wayne.edu>
Maintainer: Adi Laurentiu Tarca <atarca at med.wayne.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SPIA")
To cite this package in a publication, start R and enter:
citation("SPIA")
Documentation
R Script | SPIA | |
Reference Manual |
Details
biocViews | GraphsAndNetworks, Microarray, Software |
Version | 2.12.0 |
In Bioconductor since | BioC 2.4 (R-2.9) |
License | GPL (>= 2) |
Depends | R (>= 2.14.0), graphics, KEGGgraph |
Imports | graphics |
Suggests | graph, Rgraphviz, hgu133plus2.db |
System Requirements | |
URL | http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1 |
Depends On Me | |
Imports Me | |
Suggests Me | graphite, KEGGgraph |
Package Downloads
Package Source | SPIA_2.12.0.tar.gz |
Windows Binary | SPIA_2.12.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | SPIA_2.12.0.tgz |
Package Downloads Report | Download Stats |
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