IL, Lukasser M, Huttenhofer A, Stadler PF: Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.

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Dinucleotide Controlled Null Models for Comparative RNA Gene Prediction

by Tanja Gesell, Stefan Washietl, Tanja Gesell, Stefan Washietl
"... Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatics. 8:33] that RNA gene prediction programs can be biased by the genomic dinucleotide content, in particular those program ..."
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Computational RNomics of Drosophilids

by Dominic Rose, Jörg Hackermüller, Stefan Washietl, Kristin Reiche, Jana Hertel, Peter F. Stadler, Sonja J. Prohaska, Peter F. Stadler, Sonja J. Prohaska
"... Background: Recent experimental and computational studies have provided overwhelming evidence for a plethora of diverse transcripts that are unrelated to protein-coding genes. One subclass consists of those RNAs that require distinctive secondary structure motifs to exert their biological function a ..."
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Detection of RNA structures in porcine EST data and related mammals. BMC Genomics 8:316

by Bmc Genomics, Stefan E Seemann, Michael J Gilchrist, Ivo L Hofacker, Peter F Stadler, Jan Gorodkin, Peter F Stadler, Jan Gorodkin , 2007
"... Research article ..."
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BMC Bioinformatics BioMed Central Methodology article

by Tanja Gesell, Stefan Washietl , 2008
"... © 2008 Gesell and Washietl; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ..."
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BioMed Central Research article GIFtS: annotation landscape analysis with GeneCards

by Bmc Bioinformatics, Arye Harel, Aron Inger, Gil Stelzer, Liora Strichman-almashanu, Irina Dalah, Marilyn Safran, Doron Lancet , 2009
"... This is an Open Access article distributed under the terms of the Creative Commons Attribution License ..."
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BMC Evolutionary Biology BioMed Central

by Michael D Woodhams, Peter F Stadler, David Penny, Lesley J Collins, Michael D Woodhams, Peter F Stadler, David Penny, Lesley J Collins , 2007
"... RNase MRP and the RNA processing cascade in the eukaryotic ancestor ..."
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Retrovirology BioMed Central Commentary

by Small Non-coding Rnas, Mammalian Cells, Viruses Regulatory, Monsef Benkirane, Kuan-teh Jeang , 2007
"... This is an Open Access article distributed under the terms of the Creative Commons Attribution License ..."
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2007 Prakash Volume 8, and Issue Tompa 6, Article R124 Open Access Method Measuring the accuracy of genome-size multiple alignments

by Amol Prakash, Martin Tompa , 2007
"... The electronic version of this article is the complete one and can be ..."
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by Adnane Sellam, Herve Hogues, Christopher Askew, Faiza Tebbji, Hugo Lavoie, Carol A Kumamoto, Malcolm Whiteway, Andre Nantel, Adnane Sellam, Hervé Hogues, Christopher Askew, Faiza Tebbji, Marco Van Het, Hugo Lavoie, Carol A. Kumamoto, Malcolm Whiteway, André Nantel , 2010
"... PDF corresponds to the article as it appeared upon acceptance. Copyedited and fully formatted PDF and full text (HTML) versions will be made available soon. Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays ..."
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Open Access

by Adnane Sellam, Hervé Hogues, Christopher Askew, Faiza Tebbji, Marco Van Het Hoog, Hugo Lavoie, Carol A Kumamoto, Malcolm Whiteway, André Nantel
"... Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays ..."
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