Why Use Consed?
- Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types
- Consed now includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence in targetted regions.
- Consed is compatible with Newbler, Cross_match, Phrap, MIRA, Velvet and PCAP output.
- Quickly takes the user to each variant site for viewing (also available as an automated report)
- Overview of assembly can help detect and fix misassemblies
- Consed is licensed to over 4000 sites and climbing. In *active* use at over 230 sites in 36 countries including biotech, chemical, pharmaceutical, and agricultural companies, major genome centers, small academic labs, and government labs
- Editing time reduced by the program's ability to pin-point problem areas
- Editing is guided by error probabilities
- Consed is able to pick primers very successfully (98 out of 98 in a controlled study). Labs that use it are quite happy with it.
- Able to pick PCR primers to amplify a region, even if you only have a fasta file for the region
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