Wednesday, 30 January 2013

CAGE-KID Cancer Genomics Workshop

CAGE-KID Cancer Genomics Workshop
Venue:
European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD
United Kingdom
See map: Google Maps
Date:
Monday, March 18, 2013 - Friday, March 22, 2013
Organisers:
Gabriella Rustici
Admin support:
Johanna Langrish
Registration Deadline:
Thursday, January 31, 2013
Participation:
Open application with selection

Sunday, 27 January 2013

genomes and genomic databases


COG
Clusters of orthologous groups of proteins

CoGenT++
Complete genome tracking:predicted peptides from fully sequenced genomes.




CORG
Comparative regulatory genomics:conserved non-coding sequence blocks

DEG
Database of essential genes from bacteria and yeast.

EBI Genomes
EBI's collection of databases for the analysis of complete and unfinished viral,prokaryotic,and eukaryotic genomes.

EGO
Eukaryotic gene orthologs:orthologous DNA sequences in the TIGR gene indices.

EMGlib
Enhanced microbial genomes library:complete sequenced genomes of unicellular organisms.

Entrez Genomes
NCBI's collection of databases for the analysis of complete and unfinished viral,prokaryotic,and eukaryotic genoems.




ERGOLight
Integrated biochemical data on 9 bacterial genomes:publicly-available portion of the ERGO database.

FusionDB
Databse of bacterial and archaeal gene fusion events.




Genome Atlas
DNA structural properties of sequenced genomes




Genome Information Broker
DDBJ's collection of genome databases

Genome Reviews
Integrated view of complete genomes.

GOLD
Genomes online databases:a listing of complete and ongoing genome projects.

HGT-DB
Putative horizontally-transferred genes in prokaryotic genomes


Interrupted coding sequences

IMG
Integrated microbial genome databasae

integr8
Functional classification of protein in whole genomes

SCIENTIFIC SEARCH ENGINES AND JOURNAL PORTALS

  PO
1.Scirus
Scirus is a web portal for scientists by Elsevier.
Most comprehensive science-specific search engineon the internet.
2.Community of Science
Community of science is the leading site for global R&D community.
3.DOE Information Bridge
The DOE Information Bridge provides free and convenient access to full-text and bibliographic records of the Department of Energy's(DOE)research and development reports.
4.HighWire Press
Highwire press is a division of the stanford university libraries,which produces the online version of high-impact,peer-reviewed journals and other scholarly content.
5.Ingenta
Ingentaconnect from Publishing Technology distributes your content to over 25 million individual users a month. An all-inclusive and cost-effective package. ingentaconnect gives you access to the largest linking network of its kind online.
6.PubMed
PubMed comprises over 22 million citations for biomedical literature from MEDLINE, life science journals, and online books. PubMed citations and abstracts include the fields of biomedicine and health, covering portions of the life sciences, behavioral sciences, chemical sciences, and bioengineering. PubMed also provides access to additional relevant web sites and links to the other NCBI molecular biology resources.
7.MEDLINE
MEDLINE® contains journal citations and abstracts for biomedical literature from around the world.  PubMed® provides free access to MEDLINE and links to full text articles when possible.
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8.Science.gov
Science.gov searches over 55 databases and over 2100 selected websites from 13 federal agencies, offering 200 million pages of authoritative U.S. government science information including research and development results. Science.gov is governed by the interagency Science.gov Alliance
9.ScienceDirect

ScienceDirect

is a leading full-text scientific database offering journal articles and book chapters from more than 2,500 peer-reviewed journals and more than 11,000 books.
10.Scopus
Scopus, officially named SciVerse Scopus, is a bibliographic database containing abstracts and citations for academic journal articles.

Saturday, 26 January 2013

All primary Nucleotide databases

Name of Database
Full name &Description
Website



International nucleotide sequence
Database collaboration
http://www.insdc.org/



GenBank
All known nucleotide and protein sequences



DDBJ
All known nucleotide and protein sequences



EMBL
All known nucleotide and protein sequences